[SIMULATION] id = example_reac_fit multi = False # MULTI section needed if True fit = True # FIT section needed if True duration = 0.8 h # Allowed units in duration: h, min, s [CATALYST] concentration = 1.0 g/L # Allowed units in concentration: g/m^3, g/L, mg/L surface = 56.0 m^2/g # Allowed units in surface: m^2/g, cm^2/g volume = 1.0 L # Allowed units in volume: m^3, L, cm^3, mL [MOLECULE] name = ciprofloxacin composition = C17H18FN3O3 excess_bonds = 11 molar_volume = 248.0 cm^3/mol # Allowed units in molar_volume: Ang^3/molecule, nm^3/molecule, cm^3/mol molar_surface = 1.027822222222222e-18 m^2/molecule # Allowed units in molar_surface: Ang^2/molecule, nm^2/molecule, m^2/molecule diffusion_model = s # s: Stokes (default), wc: Wilke-Chang, hm: Hayduk-Minhas [SYSTEM] concentration_solution = 3.8 mg/L # Allowed units in concentration_solution: molecule/m^3, molecule/L, mol/m^3, mmol/L, M, mol/L, mo/mc, g/L, mg/L, g/m^3 concentration_surface = 0 # Allowed units in concentration_surface: molecule/m^2, mol/m^2, g/m^2, mg/m^2 # if concentration_surface is not set system is considered in equilibrium (dark) # Allowed units in k_ads: m/s # Allowed units in k_des: 1/s # Allowed units in k_reac: 1/s k_ads = 3.7e-08 m/s [FIT] # This section is just active if fit is True type = reac # dark, reaction or toc search = relative # minima search absolute, relative or relative_square # does not apply to fit type toc max_step = 100